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ATP10A-DT ATP10A divergent transcript [ Homo sapiens (human) ]

Gene ID: 105370738, updated on 10-Oct-2023

Summary

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Official Symbol
ATP10A-DTprovided by HGNC
Official Full Name
ATP10A divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55434
See related
AllianceGenome:HGNC:55434
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.1) See more
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Genomic context

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See ATP10A-DT in Genome Data Viewer
Location:
15q12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (25865270..25877210)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (23605866..23617794)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ATPase phospholipid transporting 10A (putative) Neighboring gene uncharacterized LOC107984770 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26082467-26082968 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26082969-26083468 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:26090222-26091063 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9164 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9165 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6265 Neighboring gene microRNA 4715 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:26143028-26143528 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:26143529-26144029 Neighboring gene long intergenic non-protein coding RNA 2346 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:26175613-26176114 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:26176115-26176614 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:26187987-26188487 Neighboring gene MRPS18C pseudogene 5 Neighboring gene small nucleolar RNA SNORA48

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183988.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016266

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    25865270..25877210
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    23605866..23617794
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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