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LINC02313 long intergenic non-protein coding RNA 2313 [ Homo sapiens (human) ]

Gene ID: 105370439, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02313provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2313provided by HGNC
Primary source
HGNC:HGNC:53232
See related
Ensembl:ENSG00000258474 AllianceGenome:HGNC:53232
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02313 in Genome Data Viewer
Location:
14q12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (31944853..31950294)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (26142115..26147529)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (32414059..32419500)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene NUBP iron-sulfur cluster assembly factor, mitochondrial Neighboring gene RNA, U6 small nuclear 602, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr14:32152531-32152718 Neighboring gene RNA, U6 small nuclear 455, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr14:32179127-32179660 Neighboring gene MPRA-validated peak2132 silencer Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:32370891-32372090 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:32403751-32404407 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:32413341-32414540 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:32419941-32420560 Neighboring gene ZFAND2A pseudogene 2 Neighboring gene MPRA-validated peak2133 silencer Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:32489479-32490678 Neighboring gene uncharacterized LOC105370440

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146544.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL352984, AL355112
    Related
    ENST00000553330.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    31944853..31950294
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    26142115..26147529
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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