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LINC02337 long intergenic non-protein coding RNA 2337 [ Homo sapiens (human) ]

Gene ID: 105370369, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02337provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2337provided by HGNC
Primary source
HGNC:HGNC:53257
See related
Ensembl:ENSG00000215881 AllianceGenome:HGNC:53257
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
13q34
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (111596009..111642079)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (110828931..110875949)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (112248356..112294426)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370365 Neighboring gene testis expressed 29 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112041571-112042071 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_32439 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112055149-112055694 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112055695-112056240 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112056241-112056784 Neighboring gene uncharacterized LOC107984618 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112127213-112127713 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:112184322-112185016 Neighboring gene VISTA enhancer hs1246 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:112273941-112274466 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:112274467-112274991 Neighboring gene uncharacterized LOC107983958 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112281066-112281884 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112285479-112285978 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:112286679-112287245 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112288868-112289368 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:112291253-112292172 Neighboring gene uncharacterized LOC105370366 Neighboring gene uncharacterized LOC102724489 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:112322811-112323586

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135814.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AL359649
    Related
    ENST00000401043.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    111596009..111642079
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    110828931..110875949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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