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LINC02336 long intergenic non-protein coding RNA 2336 [ Homo sapiens (human) ]

Gene ID: 105370309, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02336provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2336provided by HGNC
Primary source
HGNC:HGNC:53256
See related
AllianceGenome:HGNC:53256
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.1) See more
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Genomic context

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Location:
13q31.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (89550785..89559573)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (88754985..88763773)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1040 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:90202962-90204161 Neighboring gene long intergenic non-protein coding RNA 353 Neighboring gene heat shock protein family A (Hsp70) member 8 pseudogene 2 Neighboring gene small nucleolar RNA SNORD38 Neighboring gene RPL7L1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    89550785..89559573
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_931634.2 RNA Sequence

  2. XR_931635.2 RNA Sequence

  3. XR_007063933.1 RNA Sequence

  4. XR_007063934.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    88754985..88763773
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007084127.1 RNA Sequence

  2. XR_007084128.1 RNA Sequence

  3. XR_007084126.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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