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LINC02414 long intergenic non-protein coding RNA 2414 [ Homo sapiens (human) ]

Gene ID: 105370085, updated on 10-Oct-2023

Summary

Official Symbol
LINC02414provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2414provided by HGNC
Primary source
HGNC:HGNC:53343
See related
AllianceGenome:HGNC:53343
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
12q24.33
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (131645918..131648121, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (131692691..131694903, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (132130463..132132666, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903056 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132020834-132021416 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr12:132036943-132037561 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132040696-132041196 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132041197-132041697 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132044895-132045396 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132045397-132045896 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132051425-132051924 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:132059886-132060461 Neighboring gene uncharacterized LOC105370084 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7364 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7365 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132088366-132088906 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7366 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132102130-132102630 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132102631-132103131 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132107913-132108668 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr12:132109425-132110180 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:132123326-132123520 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132129166-132129742 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132129771-132130762 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132130763-132131753 Neighboring gene uncharacterized LOC105370086 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132145509-132146222 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132146223-132146934 Neighboring gene uncharacterized LOC100996701 Neighboring gene RNA, 5S ribosomal pseudogene 377

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146868.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC117500, DB035218, DB337375

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    131645918..131648121 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    131692691..131694903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)