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LINC02419 long intergenic non-protein coding RNA 2419 [ Homo sapiens (human) ]

Gene ID: 105370078, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02419provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2419provided by HGNC
Primary source
HGNC:HGNC:53349
See related
AllianceGenome:HGNC:53349
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.6) See more
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Genomic context

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Location:
12q24.33
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (130071335..130072685)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (130108482..130109832)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (130555880..130557230)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2418 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:130529633-130530577 Neighboring gene Sharpr-MPRA regulatory region 1535 Neighboring gene uncharacterized LOC105370077 Neighboring gene NANOG hESC enhancer GRCh37_chr12:130560143-130560670 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:130571983-130572500 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:130572501-130573018 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:130597592-130598092 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:130615286-130615803 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:130615804-130616320 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:130616321-130616838 Neighboring gene uncharacterized LOC124903088 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_25699 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_25704 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_25722 Neighboring gene FZD10 antisense divergent transcript Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:130645489-130646055 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:130646056-130646622

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146538.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC135388

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    130071335..130072685
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    130108482..130109832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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