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LINC02356 long intergenic non-protein coding RNA 2356 [ Homo sapiens (human) ]

Gene ID: 105369984, updated on 25-Oct-2023

Summary

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Official Symbol
LINC02356provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2356provided by HGNC
Primary source
HGNC:HGNC:53278
See related
Ensembl:ENSG00000257595 AllianceGenome:HGNC:53278
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02356 in Genome Data Viewer
Location:
12q24.12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (111369261..111403310)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (111349757..111383868)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene cut like homeobox 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:111791286-111791786 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:111799560-111800216 Neighboring gene RNA, 5S ribosomal pseudogene 373 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4865 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7031 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4866 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4867 Neighboring gene PH domain containing endocytic trafficking adaptor 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4868 Neighboring gene heat shock protein family A (Hsp70) member 8 pseudogene 14 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:111851003-111851850 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:111855471-111856170 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:111863315-111863890 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7032 Neighboring gene uncharacterized LOC124903019 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7033 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7034 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:111873559-111874138 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:111874139-111874718 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:111876422-111876935 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:111877948-111878492 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:111880447-111880633 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7035 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7036 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7037 Neighboring gene SH2B adaptor protein 3 Neighboring gene ataxin 2 Neighboring gene U7 small nuclear RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187520.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005805

  2. NR_187521.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005805
    Related
    ENST00000552663.2

  3. NR_187522.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005805

  4. NR_187523.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005805

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    111369261..111403310
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    111349757..111383868
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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