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LOC105369911 uncharacterized LOC105369911 [ Homo sapiens (human) ]

Gene ID: 105369911, updated on 10-Oct-2023

Summary

Gene symbol
LOC105369911
Gene description
uncharacterized LOC105369911
See related
Ensembl:ENSG00000257283
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in prostate (RPKM 2.1), heart (RPKM 0.7) and 13 other tissues See more
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Genomic context

Location:
12q22
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (93894965..93943606, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (93876466..93925097, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (94288741..94337382, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene CASP2 and RIPK1 domain containing adaptor with death domain Neighboring gene CRADD antisense RNA 1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:94135094-94136050 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:94136051-94137007 Neighboring gene Sharpr-MPRA regulatory region 12336 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:94178853-94180052 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:94218159-94218894 Neighboring gene RNA, 7SL, cytoplasmic 630, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4718 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6773 Neighboring gene uncharacterized LOC105369912 Neighboring gene Sharpr-MPRA regulatory region 7430 Neighboring gene Sharpr-MPRA regulatory region 1370 Neighboring gene RN7SK pseudogene 263 Neighboring gene uncharacterized LOC105369913

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135017.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    DA880232
    Related
    ENST00000550687.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    93894965..93943606 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    93876466..93925097 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)