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LINC02413 long intergenic non-protein coding RNA 2413 [ Homo sapiens (human) ]

Gene ID: 105369906, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02413provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2413provided by HGNC
Primary source
HGNC:HGNC:53342
See related
AllianceGenome:HGNC:53342
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
12q22
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (92990745..93019607)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (92971609..93002736)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene early endosome antigen 1 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 50 Neighboring gene MPRA-validated peak1889 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6754 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4703 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6755 Neighboring gene NANOG hESC enhancer GRCh37_chr12:93358015-93358572 Neighboring gene RNA, U6 small nuclear 1329, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6756 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6757 Neighboring gene MPRA-validated peak1891 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6759 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6760 Neighboring gene uncharacterized LOC643339 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:93431350-93431527 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6761 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:93467941-93468861 Neighboring gene DPPA3 pseudogene 5 Neighboring gene ribosomal protein L41 pseudogene 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    92990745..93019607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_945212.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    92971609..93002736
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007082929.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases