U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02403 long intergenic non-protein coding RNA 2403 [ Homo sapiens (human) ]

Gene ID: 105369785, updated on 8-Nov-2023

Summary

Official Symbol
LINC02403provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2403provided by HGNC
Primary source
HGNC:HGNC:53330
See related
Ensembl:ENSG00000257541 AllianceGenome:HGNC:53330
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
12q14.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (58087892..58093362)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (58065707..58071151)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (58481675..58487145)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene RN7SK pseudogene 65 Neighboring gene ST13, Hsp70 interacting protein pseudogene 8 Neighboring gene uncharacterized LOC105369784 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:58486590-58487789 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:58533509-58534303 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:58566454-58567653 Neighboring gene uncharacterized LOC105369786 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_29986 Neighboring gene ribosomal protein L21 pseudogene 103

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135022.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084033, BX484943, KF495733
    Related
    ENST00000548215.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    58087892..58093362
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003315939.2 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    4204..4864 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    58065707..58071151
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)