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LINC02461 long intergenic non-protein coding RNA 2461 [ Homo sapiens (human) ]

Gene ID: 105369740, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02461provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2461provided by HGNC
Primary source
HGNC:HGNC:53398
See related
Ensembl:ENSG00000258331 AllianceGenome:HGNC:53398
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
12q12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (43155315..43163110)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (43114339..43122163)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (43549118..43556913)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene 5'-aminolevulinate synthase 1 pseudogene Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:43354422-43355621 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:43379228-43379820 Neighboring gene MPRA-validated peak1696 silencer Neighboring gene mitochondrial ribosomal protein S36 pseudogene 5 Neighboring gene MPRA-validated peak1697 silencer Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:43666029-43666616 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 20 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:43864991-43865531 Neighboring gene ribosomal protein L21 pseudogene 101

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146866.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079319, BI767423
    Related
    ENST00000553211.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    43155315..43163110
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    43114339..43122163
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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