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C2CD5-AS1 C2CD5 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105369692, updated on 10-Oct-2023

Summary

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Official Symbol
C2CD5-AS1provided by HGNC
Official Full Name
C2CD5 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55961
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
12p12.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (22578277..22591397)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (22449739..22462860)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene C2 calcium dependent domain containing 5 Neighboring gene Sharpr-MPRA regulatory region 11196 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr12:22695717-22696236 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4289 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6098 Neighboring gene Sharpr-MPRA regulatory region 5250 Neighboring gene MPRA-validated peak1597 silencer Neighboring gene MPRA-validated peak1598 silencer Neighboring gene leucine rich repeat containing 34 pseudogene 1 Neighboring gene small integral membrane protein 30-like Neighboring gene ETNK1 divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6099 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6100 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:22778539-22779228 Neighboring gene ethanolamine kinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    22578277..22591397
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001749044.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    22449739..22462860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007083345.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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