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LINC02698 long intergenic non-protein coding RNA 2698 [ Homo sapiens (human) ]

Gene ID: 105369512, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02698provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2698provided by HGNC
Primary source
HGNC:HGNC:54212
See related
AllianceGenome:HGNC:54212
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
11q23.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (115659353..115901574)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (115672515..115914679)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5545 Neighboring gene ribosomal protein L12 pseudogene 46 Neighboring gene small nucleolar RNA U13 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115504287-115504832 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115504833-115505378 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115516252-115516892 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:115526889-115527390 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:115535875-115536376 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:115536377-115536876 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115540906-115541406 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115541407-115541907 Neighboring gene uncharacterized LOC101928985 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115611894-115612436 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115612437-115612979 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:115627599-115628798 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115629978-115630512 Neighboring gene uncharacterized LOC107987165 Neighboring gene long intergenic non-protein coding RNA 900 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:115688718-115689307 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5546 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5547 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5548 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5549 Neighboring gene long intergenic non-protein coding RNA 2703 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:115812040-115813239 Neighboring gene ribosomal protein L15 pseudogene 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    115659353..115901574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001748394.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    115672515..115914679
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007081590.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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