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LINC02713 long intergenic non-protein coding RNA 2713 [ Homo sapiens (human) ]

Gene ID: 105369454, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02713provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2713provided by HGNC
Primary source
HGNC:HGNC:54230
See related
AllianceGenome:HGNC:54230
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.1) See more
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Genomic context

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Location:
11q22.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (97878781..97957083, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (97885560..97963468, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369452 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:97593687-97594337 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:97613933-97615132 Neighboring gene NANOG hESC enhancer GRCh37_chr11:97635518-97636019 Neighboring gene uncharacterized LOC105369453 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:97690433-97691632 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:97708692-97708861 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:97727509-97728393 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:97809655-97810211 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:97836500-97837699 Neighboring gene NANOG hESC enhancer GRCh37_chr11:97951270-97951839 Neighboring gene zinc finger protein 793 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:98077541-98078042 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:98078043-98078542 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:98323806-98324306 Neighboring gene uncharacterized LOC105369455 Neighboring gene NANOG hESC enhancer GRCh37_chr11:98366426-98366927

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183633.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP002379, AP003730

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    97878781..97957083 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    97885560..97963468 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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