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LINC02737 long intergenic non-protein coding RNA 2737 [ Homo sapiens (human) ]

Gene ID: 105369443, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02737provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2737provided by HGNC
Primary source
HGNC:HGNC:54254
See related
Ensembl:ENSG00000256684 AllianceGenome:HGNC:54254
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.5) See more
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Genomic context

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See LINC02737 in Genome Data Viewer
Location:
11q21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (96508425..96514750)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (96514078..96520403)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (96241589..96247914)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3855 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:96143892-96144538 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:96144539-96145185 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:96160777-96160989 Neighboring gene JRK like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:96205677-96206178 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:96206179-96206678 Neighboring gene JRKL antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:96220661-96221455 Neighboring gene RNA, 5S ribosomal pseudogene 346 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancers GRCh37_chr11:96457069-96457656 and GRCh37_chr11:96457657-96458244 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:96463619-96464262 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:96464263-96464904 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:96479048-96479664 Neighboring gene AKTIP pseudogene 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:96609483-96610181 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:96647886-96648498 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:96835507-96836045 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:96836046-96836583 Neighboring gene mediator complex subunit 28 pseudogene 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135097.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA393706, AA400723, AP003781
    Related
    ENST00000543403.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    96508425..96514750
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    96514078..96520403
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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