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LINC02754 long intergenic non-protein coding RNA 2754 [ Homo sapiens (human) ]

Gene ID: 105369360, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02754provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2754provided by HGNC
Primary source
HGNC:HGNC:54274
See related
AllianceGenome:HGNC:54274
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in liver (RPKM 1.8), kidney (RPKM 1.5) and 6 other tissues See more
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Genomic context

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Location:
11q13.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (67884428..67894096)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (67888139..67897796)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:67559082-67559894 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:67560708-67561519 Neighboring gene ALG1 like 8, pseudogene Neighboring gene family with sequence similarity 86, member A pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:67570465-67570966 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:67570967-67571466 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3650 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:67573265-67573766 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:67573767-67574266 Neighboring gene translation initiation factor IF-2-like Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 7 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:67593458-67593966 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:67593967-67594475 Neighboring gene NANOG hESC enhancer GRCh37_chr11:67610458-67611043 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr11:67624072-67624744 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:67640251-67640752 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:67640753-67641252 Neighboring gene RNA, U6 small nuclear 46, pseudogene Neighboring gene small nuclear ribonucleoprotein polypeptide C pseudogene 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183626.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP003716

  2. NR_183627.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP003716

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    67884428..67894096
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    67888139..67897796
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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