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LINC02750 long intergenic non-protein coding RNA 2750 [ Homo sapiens (human) ]

Gene ID: 105369150, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02750provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2750provided by HGNC
Primary source
HGNC:HGNC:54269
See related
AllianceGenome:HGNC:54269
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
11p11.12
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (50298563..50363535)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (50294807..50357338, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene septin 7 pseudogene 11 Neighboring gene pantothenate kinase 3 pseudogene Neighboring gene general transcription factor IIi pseudogene 15 Neighboring gene DExH-box helicase 9 pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:50686767-50687507 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:50687754-50688310 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:50756088-50756715 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:50755325-50755944 Neighboring gene NANOG hESC enhancer GRCh37_chr11:50754605-50755126 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51586485-51586995 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:51568233-51568850 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51569470-51569992 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51571860-51572381 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:51573425-51573946 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:51573947-51574468 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51579187-51579881 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51579882-51580576 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51580577-51581271 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51582329-51582850 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51582851-51583371 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51583372-51583894 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51585464-51585974 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51586996-51587505 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51588681-51589514 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:51590762-51591615 Neighboring gene olfactory receptor family 4 subfamily C member 50 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183624.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024405, AC109635

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    50298563..50363535
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    50294807..50357338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007082106.1 RNA Sequence

  2. XR_007082112.1 RNA Sequence

  3. XR_007082104.1 RNA Sequence

  4. XR_007082111.1 RNA Sequence

  5. XR_007082107.1 RNA Sequence

  6. XR_007082103.1 RNA Sequence

  7. XR_007082102.1 RNA Sequence

  8. XR_007082105.1 RNA Sequence

  9. XR_007082108.1 RNA Sequence

  10. XR_007082110.1 RNA Sequence

  11. XR_007082109.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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