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LOC105244755 uncharacterized LOC105244755 [ Mus musculus (house mouse) ]

Gene ID: 105244755, updated on 8-Feb-2024

Summary

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Gene symbol
LOC105244755
Gene description
uncharacterized LOC105244755
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5 C3.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (64865552..64961486, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (64708209..64741937, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E4756 Neighboring gene STARR-seq mESC enhancer starr_13221 Neighboring gene predicted gene 3716 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:65017708-65017817 Neighboring gene STARR-seq mESC enhancer starr_13223 Neighboring gene predicted gene, 54285 Neighboring gene STARR-positive B cell enhancer mm9_chr5:65053140-65053441 Neighboring gene STARR-positive B cell enhancer mm9_chr5:65053800-65054101 Neighboring gene STARR-seq mESC enhancer starr_13227 Neighboring gene STARR-seq mESC enhancer starr_13228 Neighboring gene STARR-seq mESC enhancer starr_13234 Neighboring gene STARR-seq mESC enhancer starr_13235 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:65155737-65155920 Neighboring gene STARR-positive B cell enhancer ABC_E10322 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:65197351-65197625 Neighboring gene predicted gene, 54286 Neighboring gene STARR-seq mESC enhancer starr_13242 Neighboring gene Kruppel-like transcription factor 3 (basic) Neighboring gene predicted gene, 31684 Neighboring gene predicted gene, 57736

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188847.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122043, AC130535

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    64865552..64961486 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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