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Gm12708 predicted gene 12708 [ Mus musculus (house mouse) ]

Gene ID: 105244624, updated on 8-Feb-2024

Summary

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Official Symbol
Gm12708provided by MGI
Official Full Name
predicted gene 12708provided by MGI
Primary source
MGI:MGI:3652178
See related
Ensembl:ENSMUSG00000084918 AllianceGenome:MGI:3652178
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
4 C5; 4 43.34 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (95081541..95097971)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (95193304..95209734)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E6191 Neighboring gene STARR-positive B cell enhancer ABC_E36 Neighboring gene STARR-positive B cell enhancer mm9_chr4:94719886-94720187 Neighboring gene STARR-positive B cell enhancer ABC_E7976 Neighboring gene jun proto-oncogene, opposite strand Neighboring gene jun proto-oncogene Neighboring gene STARR-seq mESC enhancer starr_10797 Neighboring gene STARR-seq mESC enhancer starr_10798 Neighboring gene STARR-positive B cell enhancer ABC_E11247 Neighboring gene STARR-seq mESC enhancer starr_10800 Neighboring gene STARR-seq mESC enhancer starr_10801 Neighboring gene predicted gene, 32240 Neighboring gene STARR-seq mESC enhancer starr_10802 Neighboring gene STARR-seq mESC enhancer starr_10803 Neighboring gene STARR-positive B cell enhancer ABC_E11248 Neighboring gene VISTA enhancer mm308 Neighboring gene predicted gene, 54241 Neighboring gene STARR-seq mESC enhancer starr_10807 Neighboring gene STARR-seq mESC enhancer starr_10808 Neighboring gene predicted gene 12707 Neighboring gene predicted gene 830

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_166673.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL772318
    Related
    ENSMUST00000243682.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    95081541..95097971
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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