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Gm33887 predicted gene, 33887 [ Mus musculus (house mouse) ]

Gene ID: 105244034, updated on 8-Feb-2024

Summary

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Official Symbol
Gm33887provided by MGI
Official Full Name
predicted gene, 33887provided by MGI
Primary source
MGI:MGI:5593046
See related
AllianceGenome:MGI:5593046
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in subcutaneous fat pad adult (RPKM 252.0), genital fat pad adult (RPKM 202.2) and 23 other tissues See more
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Genomic context

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Location:
1; 1 H5
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (182082920..182093597)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (182255355..182266032)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein S2 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E3346 Neighboring gene signal recognition particle 9 Neighboring gene STARR-seq mESC enhancer starr_03268 Neighboring gene STARR-seq mESC enhancer starr_03269 Neighboring gene vomeronasal 1 receptor 1 Neighboring gene STARR-seq mESC enhancer starr_03270 Neighboring gene STARR-seq mESC enhancer starr_03273 Neighboring gene STARR-seq mESC enhancer starr_03274 Neighboring gene STARR-seq mESC enhancer starr_03276 Neighboring gene delta 4-desaturase, sphingolipid 1 Neighboring gene RIKEN cDNA 1700047M11 gene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
MLV-related proviral Env polyprotein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001372438.1 → NP_001359367.1  MLV-related proviral Env polyprotein-like

    Status: VALIDATED

    Source sequence(s)
    AC139295
    UniProtKB/Swiss-Prot
    P10404, Q78N71, Q78N73, Q78N94, Q80SW7, Q80SW8, Q80SY0, Q80SY1, Q811M9, Q811N4
    Conserved Domains (1) summary
    pfam00429
    Location:21 → 611
    TLV_coat; ENV polyprotein (coat polyprotein)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    182082920..182093597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030244781.1 → XP_030100641.1  MLV-related proviral Env polyprotein-like isoform X1

    UniProtKB/Swiss-Prot
    P10404, Q78N71, Q78N73, Q78N94, Q80SW7, Q80SW8, Q80SY0, Q80SY1, Q811M9, Q811N4
    Conserved Domains (1) summary
    pfam00429
    Location:21 → 611
    TLV_coat; ENV polyprotein (coat polyprotein)

  2. XM_030244782.2 → XP_030100642.1  MLV-related proviral Env polyprotein-like isoform X1

    UniProtKB/Swiss-Prot
    P10404, Q78N71, Q78N73, Q78N94, Q80SW7, Q80SW8, Q80SY0, Q80SY1, Q811M9, Q811N4
    Conserved Domains (1) summary
    pfam00429
    Location:21 → 611
    TLV_coat; ENV polyprotein (coat polyprotein)

  3. XM_030244778.2 → XP_030100638.1  MLV-related proviral Env polyprotein-like isoform X1

    UniProtKB/Swiss-Prot
    P10404, Q78N71, Q78N73, Q78N94, Q80SW7, Q80SW8, Q80SY0, Q80SY1, Q811M9, Q811N4
    Conserved Domains (1) summary
    pfam00429
    Location:21 → 611
    TLV_coat; ENV polyprotein (coat polyprotein)

  4. XM_030244780.1 → XP_030100640.1  MLV-related proviral Env polyprotein-like isoform X1

    UniProtKB/Swiss-Prot
    P10404, Q78N71, Q78N73, Q78N94, Q80SW7, Q80SW8, Q80SY0, Q80SY1, Q811M9, Q811N4
    Conserved Domains (1) summary
    pfam00429
    Location:21 → 611
    TLV_coat; ENV polyprotein (coat polyprotein)

  5. XM_030244777.2 → XP_030100637.1  MLV-related proviral Env polyprotein-like isoform X1

    UniProtKB/Swiss-Prot
    P10404, Q78N71, Q78N73, Q78N94, Q80SW7, Q80SW8, Q80SY0, Q80SY1, Q811M9, Q811N4
    Conserved Domains (1) summary
    pfam00429
    Location:21 → 611
    TLV_coat; ENV polyprotein (coat polyprotein)

  6. XM_030244783.1 → XP_030100643.1  MLV-related proviral Env polyprotein-like isoform X1

    UniProtKB/Swiss-Prot
    P10404, Q78N71, Q78N73, Q78N94, Q80SW7, Q80SW8, Q80SY0, Q80SY1, Q811M9, Q811N4
    Conserved Domains (1) summary
    pfam00429
    Location:21 → 611
    TLV_coat; ENV polyprotein (coat polyprotein)
Nucleotide Protein Strain
Heading Accession and Version

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