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Gm39090 predicted gene, 39090 [ Mus musculus (house mouse) ]

Gene ID: 105243058, updated on 8-Feb-2024

Summary

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Official Symbol
Gm39090provided by MGI
Official Full Name
predicted gene, 39090provided by MGI
Primary source
MGI:MGI:5621975
See related
Ensembl:ENSMUSG00000108801 AllianceGenome:MGI:5621975
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm44514
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
7 F3; 7
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (127290835..127300814)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (127691586..127703055)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 51458 Neighboring gene predicted gene, 53373 Neighboring gene B cell CLL/lymphoma 7C Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:134851639-134851826 Neighboring gene microRNA 762 Neighboring gene cardiotrophin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_176651.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC124507

  2. NR_176652.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC124507

  3. NR_176653.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC124507
    Related
    ENSMUST00000246564.1

  4. NR_176654.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC124507

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    127290835..127300814
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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