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BC028471 cDNA sequence BC028471 [ Mus musculus (house mouse) ]

Gene ID: 105242581, updated on 8-Feb-2024

Summary

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Official Symbol
BC028471provided by MGI
Official Full Name
cDNA sequence BC028471provided by MGI
Primary source
MGI:MGI:3041249
See related
AllianceGenome:MGI:3041249
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward thymus adult (RPKM 5.9) See more
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Genomic context

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Location:
5 G3; 5 89.18 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (149291032..149330769)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm1702 Neighboring gene predicted gene, 35704 Neighboring gene predicted gene, 38753 Neighboring gene STARR-positive B cell enhancer ABC_E11310 Neighboring gene mesenteric estrogen dependent adipogenesis Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:150230952-150231169 Neighboring gene RIKEN cDNA 4933425D22 gene Neighboring gene testis expressed 26

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000071.7 Chromosome 5 Reference GRCm39 C57BL/6J

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    149291032..149330769
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004942702.1 RNA Sequence

  2. XR_004942698.1 RNA Sequence

  3. XR_004942697.1 RNA Sequence

  4. XR_004942700.1 RNA Sequence

  5. XR_004942703.1 RNA Sequence

  6. XR_004942701.1 RNA Sequence

  7. XR_004942699.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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