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LINC01402 long intergenic non-protein coding RNA 1402 [ Homo sapiens (human) ]

Gene ID: 104797536, updated on 10-Oct-2023

Summary

Official Symbol
LINC01402provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1402provided by HGNC
Primary source
HGNC:HGNC:50685
See related
Ensembl:ENSG00000101883 AllianceGenome:HGNC:50685
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GS1-421I3.4; TCONS_00017087
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01402 in Genome Data Viewer
Location:
Xq24
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (120117642..120119700, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (118492754..118494812, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (119251552..119253610, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chrX:119148782-119148953 Neighboring gene Rhox homeobox family member 1 pseudogene 1 Neighboring gene RHOXF1 antisense RNA 1 Neighboring gene NANOG hESC enhancer GRCh37_chrX:119177771-119178272 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:119185571-119186072 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:119186073-119186572 Neighboring gene Rhox homeobox family member 2B Neighboring gene ReSE screen-validated silencer GRCh37_chrX:119254442-119254623 Neighboring gene Rhox homeobox family member 1 Neighboring gene Rhox homeobox family member 2 Neighboring gene SFR1 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126557.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC240732
    Related
    ENST00000422226.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    120117642..120119700 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    118492754..118494812 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)