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SALRNA1 senescence associated long non-coding RNA 1 [ Homo sapiens (human) ]

Gene ID: 104548971, updated on 10-Oct-2023

Summary

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Official Symbol
SALRNA1provided by HGNC
Official Full Name
senescence associated long non-coding RNA 1provided by HGNC
Primary source
HGNC:HGNC:49001
See related
AllianceGenome:HGNC:49001
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SAL-RNA1; XLOC_023166
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Genomic context

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Location:
14q23.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (60639216..60640416)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (54845671..54846871)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (61105934..61107134)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene ribosomal protein L37 pseudogene 5 Neighboring gene ribosomal protein S15a pseudogene 4 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:61110622-61111184 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:61113614-61114236 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:61114237-61114858 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:61114859-61115480 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:61115481-61116101 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5813 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:61119031-61119800 Neighboring gene VISTA enhancer hs1602 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5814 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8479 Neighboring gene microRNA 9718 Neighboring gene SIX homeobox 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5815 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5816 Neighboring gene SIX homeobox 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Senescence-associated lncRNAs: senescence-associated long noncoding RNAs. Abdelmohsen K, et al. Aging Cell, 2013 Oct. PMID 23758631, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126480.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL049874

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    60639216..60640416
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    54845671..54846871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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