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TET2-AS1 TET2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 104384744, updated on 10-Oct-2023

Summary

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Official Symbol
TET2-AS1provided by HGNC
Official Full Name
TET2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:41125
See related
AllianceGenome:HGNC:41125
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See TET2-AS1 in Genome Data Viewer
Location:
4q24
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (105171354..105352881, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (108482263..108663790, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (106092511..106274038, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene nucleoporin Nup43-like Neighboring gene uncharacterized LOC124900868 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21776 Neighboring gene NANOG hESC enhancer GRCh37_chr4:106064399-106064900 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15606 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21777 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21778 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15607 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:106083203-106083911 Neighboring gene tet methylcytosine dioxygenase 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21779 Neighboring gene RNA, 7SL, cytoplasmic 89, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr4:106307176-106307329 Neighboring gene inorganic pyrophosphatase 2 Neighboring gene RNA, U6 small nuclear 553, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21780 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21781 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15608 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Potential readthrough

Included gene: PPA2

Other Names

  • TET2 antisense RNA 1 (non-protein coding)

Clone Names

  • AC004069.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126420.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI401598, BX100522

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    105171354..105352881 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    108482263..108663790 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases