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LINC00399 long intergenic non-protein coding RNA 399 [ Homo sapiens (human) ]

Gene ID: 104326054, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00399provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 399provided by HGNC
Primary source
HGNC:HGNC:42728
See related
Ensembl:ENSG00000229792 AllianceGenome:HGNC:42728
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TCONS_00021596
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
13q33.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (109400696..109401641)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (108628696..108629641)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (110053043..110053988)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC130494219 Neighboring gene long intergenic non-protein coding RNA 370 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:109985471-109985971 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:110001130-110002329 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:110021749-110022746 Neighboring gene uncharacterized LOC105370359 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:110076314-110076837 Neighboring gene heart enhancer 14 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:110141574-110141689 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:110165798-110166997 Neighboring gene uncharacterized LOC107984602 Neighboring gene uncharacterized LOC124903210 Neighboring gene uncharacterized LOC101927627

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126361.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL160031, BX111569
    Related
    ENST00000439008.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    109400696..109401641
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    108628696..108629641
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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