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LINC01221 long intergenic non-protein coding RNA 1221 [ Homo sapiens (human) ]

Gene ID: 104266961, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01221provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1221provided by HGNC
Primary source
HGNC:HGNC:49671
See related
Ensembl:ENSG00000235492 AllianceGenome:HGNC:49671
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TCONS_00000366
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01221 in Genome Data Viewer
Location:
1q32.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (199016133..199076735)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (198274829..198335432)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (198985262..199045864)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene MIR181A1 host gene Neighboring gene microRNA 181a-1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2285 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2286 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2287 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2288 Neighboring gene ribosomal protein S2 pseudogene 9 Neighboring gene long intergenic non-protein coding RNA 1222 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2289 Neighboring gene uncharacterized LOC107985243 Neighboring gene NANOG hESC enhancer GRCh37_chr1:199085580-199086086 Neighboring gene long intergenic non-protein coding RNA 2789 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2290 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:199187681-199188395 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2291 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2292 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2293 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:199241403-199242602 Neighboring gene ribosomal protein L23a pseudogene 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126351.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096631, AC105941
    Related
    ENST00000432488.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    199016133..199076735
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    198274829..198335432
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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