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Qsox1 quiescin Q6 sulfhydryl oxidase 1 [ Mus musculus (house mouse) ]

Gene ID: 104009, updated on 11-Apr-2024

Summary

Official Symbol
Qsox1provided by MGI
Official Full Name
quiescin Q6 sulfhydryl oxidase 1provided by MGI
Primary source
MGI:MGI:1330818
See related
Ensembl:ENSMUSG00000033684 AllianceGenome:MGI:1330818
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SOx; QSOX; Qscn6; b2b2673Clo; 1300003H02Rik
Summary
Predicted to enable FAD binding activity; flavin-linked sulfhydryl oxidase activity; and protein disulfide isomerase activity. Predicted to be involved in extracellular matrix assembly; negative regulation of macroautophagy; and protein folding. Located in extracellular space. Is expressed in several structures, including alimentary system; cardiovascular system; nervous system; respiratory system; and skin. Used to study VACTERL association. Orthologous to human QSOX1 (quiescin sulfhydryl oxidase 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in liver adult (RPKM 148.9), liver E18 (RPKM 139.0) and 21 other tissues See more
Orthologs
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Genomic context

See Qsox1 in Genome Data Viewer
Location:
1 G3; 1 67.64 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (155653901..155688645, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (155778155..155812899, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:157405138-157405321 Neighboring gene STARR-positive B cell enhancer ABC_E9484 Neighboring gene STARR-positive B cell enhancer mm9_chr1:157423836-157424136 Neighboring gene acyl-Coenzyme A binding domain containing 6 Neighboring gene STARR-seq mESC enhancer starr_02727 Neighboring gene LIM homeobox protein 4 Neighboring gene STARR-positive B cell enhancer mm9_chr1:157659814-157660115 Neighboring gene centrosomal protein 350 Neighboring gene predicted gene, 36934 Neighboring gene predicted gene, 51652

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Chemically induced (ENU) (1) 
  • Endonuclease-mediated (3) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables FAD binding ISO
Inferred from Sequence Orthology
more info
 
enables flavin-dependent sulfhydryl oxidase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables flavin-dependent sulfhydryl oxidase activity ISO
Inferred from Sequence Orthology
more info
PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
enables protein disulfide isomerase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein disulfide isomerase activity ISO
Inferred from Sequence Orthology
more info
 
enables thiol oxidase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in extracellular matrix assembly ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of macroautophagy ISO
Inferred from Sequence Orthology
more info
 
involved_in protein folding IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
PubMed 
is_active_in Golgi membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in Golgi membrane ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
PubMed 
located_in extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular space HDA PubMed 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in extracellular space ISO
Inferred from Sequence Orthology
more info
 
located_in intercellular bridge ISO
Inferred from Sequence Orthology
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
sulfhydryl oxidase 1
Names
skin sulfhydryl oxidase
NP_001020116.1
NP_075757.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024945.1NP_001020116.1  sulfhydryl oxidase 1 isoform a precursor

    See identical proteins and their annotated locations for NP_001020116.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform a).
    Source sequence(s)
    AK083938, BY334148, CK625426
    Consensus CDS
    CCDS15386.1
    UniProtKB/Swiss-Prot
    Q3TDY9, Q3TE19, Q3TR29, Q3UEL4, Q8BND5, Q8K041, Q9DBL6
    Related
    ENSMUSP00000035658.9, ENSMUST00000035325.15
    Conserved Domains (2) summary
    cd02992
    Location:43155
    PDI_a_QSOX; PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the ...
    pfam04777
    Location:409501
    Evr1_Alr; Erv1 / Alr family
  2. NM_023268.2NP_075757.1  sulfhydryl oxidase 1 isoform b precursor

    See identical proteins and their annotated locations for NP_075757.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region compared to variant 1. The resulting protein (isoform b) is shorter and has a distinct C-terminus compared to isoform a.
    Source sequence(s)
    AB044284, AK083938, BY334148, CK625426
    Consensus CDS
    CCDS78713.1
    UniProtKB/Swiss-Prot
    Q8BND5
    Related
    ENSMUSP00000142301.2, ENSMUST00000194632.2
    Conserved Domains (2) summary
    cd02992
    Location:43155
    PDI_a_QSOX; PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the ...
    pfam04777
    Location:409501
    Evr1_Alr; Erv1 / Alr family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    155653901..155688645 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)