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HMGB1P5 high mobility group box 1 pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 10354, updated on 16-Jan-2024

Summary

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Official Symbol
HMGB1P5provided by HGNC
Official Full Name
high mobility group box 1 pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:4997
See related
Ensembl:ENSG00000293339 AllianceGenome:HGNC:4997
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HMG-1; HMG1L5; HMGB1L5; HMGB1P2; HMGB1L15
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Genomic context

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See HMGB1P5 in Genome Data Viewer
Location:
3p24.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (22381721..22382915)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (22386476..22387661)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (22423212..22424406)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene zinc finger protein 385D Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:21584849-21585429 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:21589175-21589999 Neighboring gene ZNF385D antisense RNA 1 Neighboring gene MPRA-validated peak4572 silencer Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68017 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68021 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68035 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68037 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68058 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68089 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68153 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68192 Neighboring gene ZNF385D antisense RNA 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:22029852-22030429 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68287 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68298 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_68318 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:22347885-22348477 Neighboring gene FCRL4 pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:22843155-22843752 Neighboring gene RRBP1 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A retropseudogene for non-histone chromosomal protein HMG-1. Stros M, et al. Biochim Biophys Acta, 1993 Feb 20. PMID 8439568
  2. Mapping and molecular characterization of five HMG1-related DNA sequences. Rogalla P, et al. Cytogenet Cell Genet, 1998. PMID 9925949
  3. The DNA sequence of human chromosome 22. Dunham I, et al. Nature, 1999 Dec 2. PMID 10591208

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • high-mobility group (nonhistone chromosomal) protein 1-like 5 pseudogene
  • high-mobility group box 1 pseudogene 2
  • high-mobility group box 1-like 15
  • high-mobility group box 1-like 5 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_000897.6 

    Range
    101..1295
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    22381721..22382915
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    22386476..22387661
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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