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H2BC16P H2B clustered histone 16, pseudogene [ Homo sapiens (human) ]

Gene ID: 10340, updated on 10-Oct-2023

Summary

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Official Symbol
H2BC16Pprovided by HGNC
Official Full Name
H2B clustered histone 16, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:4754
See related
Ensembl:ENSG00000217646 AllianceGenome:HGNC:4754
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
H2BFIP; pH2B.i; pH2B/i; HIST1H2BPS2
Summary
Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This histone pseudogene is found in the small histone gene cluster on chromosome 6. [provided by RefSeq, Oct 2015]
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Genomic context

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Location:
6p22.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (27864062..27864401, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (27733733..27734072, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (27831840..27832179, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24320 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24321 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24322 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24323 Neighboring gene H2A clustered histone 15 Neighboring gene H2B clustered histone 15 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24324 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24325 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24326 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:27833113-27833634 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24329 Neighboring gene H2A clustered histone 16 Neighboring gene H1.5 linker histone, cluster member

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the H1.5 gene completes the set of human H1 subtype genes. Albig W, et al. Gene, 1997 Jan 15. PMID 9031620

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • H2B histone family, member I, pseudogene
  • histone 1, H2b, pseudogene 2
  • histone cluster 1 H2B pseudogene 2
  • histone cluster 1, H2b, pseudogene 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029324.1 

    Range
    101..440
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    27864062..27864401 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    27733733..27734072 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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