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PYDC2-AS1 PYDC2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 103344926, updated on 10-Oct-2023

Summary

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Official Symbol
PYDC2-AS1provided by HGNC
Official Full Name
PYDC2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:52874
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINCR-0002
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
3q28
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (191425524..191590356)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (191143313..191308145)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene OSTN antisense RNA 1 Neighboring gene osteocrin Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20988 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20989 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20990 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:191019724-191020249 Neighboring gene urotensin 2B Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:191046750-191047351 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:191047352-191047952 Neighboring gene coiled-coil domain containing 50 Neighboring gene Sharpr-MPRA regulatory region 6572 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_67093 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:191217087-191217641 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:191217642-191218195 Neighboring gene uncharacterized LOC124909472 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_67118 Neighboring gene pyrin domain containing 2 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_67229 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_67240 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_67247 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_67266 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_67312 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_67329 Neighboring gene MPRA-validated peak4974 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr3:191365738-191366324 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:191389630-191390441 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:191406426-191407254 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:191420965-191421738 Neighboring gene uncharacterized LOC105374275 Neighboring gene uncharacterized LOC124909473

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Conserved expression of lincRNA during human and macaque prefrontal cortex development and maturation. He Z, et al. RNA, 2014 Jul. PMID 24847104, Free PMC Article
  2. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. Wang AG, et al. Biochem Biophys Res Commun, 2006 Jul 7. PMID 16712791

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120606.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125608, BU620307, BX365943, CB115312

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    191425524..191590356
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases