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LINC02759 long intergenic non-protein coding RNA 2759 [ Homo sapiens (human) ]

Gene ID: 103312105, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02759provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2759provided by HGNC
Primary source
HGNC:HGNC:54279
See related
Ensembl:ENSG00000255175 AllianceGenome:HGNC:54279
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
11p12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (38618264..38646356, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (38762730..38790830, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (38639814..38667906, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:37989075-37989576 Neighboring gene NANOG hESC enhancer GRCh37_chr11:37990791-37991343 Neighboring gene long intergenic non-protein coding RNA 2760 Neighboring gene NANOG hESC enhancer GRCh37_chr11:38070931-38071450 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:38132226-38133425 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:38134504-38135142 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:38173897-38174616 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:38190669-38191868 Neighboring gene uncharacterized LOC105376634 Neighboring gene DNAAF11 pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:38272133-38272636 Neighboring gene MPRA-validated peak1259 silencer Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:38615819-38617018 Neighboring gene uncharacterized LOC105376635 Neighboring gene long intergenic non-protein coding RNA 1493 Neighboring gene uncharacterized LOC101928563

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120554.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC022796
    Related
    ENST00000531882.1

  2. NR_120555.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' terminal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC022796
    Related
    ENST00000529017.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    38618264..38646356 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    38762730..38790830 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases