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LOC102724859 uncharacterized LOC102724859 [ Homo sapiens (human) ]

Gene ID: 102724859, updated on 10-Oct-2023

Summary

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Gene symbol
LOC102724859
Gene description
uncharacterized LOC102724859
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.0), small intestine (RPKM 0.3) and 9 other tissues See more
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Genomic context

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Location:
16q12.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (49282062..49294208)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (55079807..55088132)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724847 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:49247419-49248016 Neighboring gene NANOG hESC enhancer GRCh37_chr16:49250537-49251060 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49309093-49309618 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49310145-49310670 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49311724-49312250 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49312251-49312775 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49314853-49315470 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7459 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7460 Neighboring gene cerebellin 1 precursor Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49346195-49346696 Neighboring gene uncharacterized LOC105371243 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49346697-49347196 Neighboring gene uncharacterized LOC124903689 Neighboring gene Sharpr-MPRA regulatory region 1482

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    49282062..49294208
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001752140.3 RNA Sequence

  2. XR_001752143.3 RNA Sequence

  3. XR_001752147.3 RNA Sequence

  4. XR_001752150.3 RNA Sequence

  5. XR_007065067.1 RNA Sequence

  6. XR_001752158.3 RNA Sequence

  7. XR_001752163.3 RNA Sequence

  8. XR_001752149.3 RNA Sequence

  9. XR_001752157.3 RNA Sequence

  10. XR_001752154.3 RNA Sequence

  11. XR_933530.4 RNA Sequence

  12. XR_001752165.3 RNA Sequence

  13. XR_001752161.3 RNA Sequence

  14. XR_001752144.3 RNA Sequence

  15. XR_007065066.1 RNA Sequence

  16. XR_001752160.3 RNA Sequence

  17. XR_001752145.3 RNA Sequence

  18. XR_002957875.2 RNA Sequence

  19. XR_002957874.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    55079807..55088132
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007086453.1 RNA Sequence

  2. XR_007086455.1 RNA Sequence

  3. XR_007086456.1 RNA Sequence

  4. XR_007086449.1 RNA Sequence

  5. XR_007086443.1 RNA Sequence

  6. XR_007086439.1 RNA Sequence

  7. XR_007086446.1 RNA Sequence

  8. XR_007086452.1 RNA Sequence

  9. XR_007086454.1 RNA Sequence

  10. XR_007086447.1 RNA Sequence

  11. XR_007086451.1 RNA Sequence

  12. XR_007086442.1 RNA Sequence

  13. XR_007086438.1 RNA Sequence

  14. XR_007086441.1 RNA Sequence

  15. XR_007086444.1 RNA Sequence

  16. XR_007086450.1 RNA Sequence

  17. XR_007086440.1 RNA Sequence

  18. XR_007086445.1 RNA Sequence

  19. XR_007086448.1 RNA Sequence

Nucleotide Protein
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