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LOC102724684 uncharacterized LOC102724684 [ Homo sapiens (human) ]

Gene ID: 102724684, updated on 10-Oct-2023

Summary

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Gene symbol
LOC102724684
Gene description
uncharacterized LOC102724684
See related
Ensembl:ENSG00000267026
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.3) See more
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Genomic context

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Location:
9q22.33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (98868988..98877333, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (111040687..111049032, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902229 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20122 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20123 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 12 Neighboring gene Sharpr-MPRA regulatory region 15412 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:101622227-101622437 Neighboring gene NME2 pseudogene 3 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:101668137-101668343 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:101670754-101670994 Neighboring gene adipocyte associated pyruvate carboxylase interacting lncRNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    98868988..98877333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_930168.2 RNA Sequence

  2. XR_428583.3 RNA Sequence

    Related
    ENST00000585704.5

  3. XR_930167.2 RNA Sequence

    Related
    ENST00000587726.5

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    111040687..111049032 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079793.1 RNA Sequence

  2. XR_007079791.1 RNA Sequence

  3. XR_007079792.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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