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LINC02031 long intergenic non-protein coding RNA 2031 [ Homo sapiens (human) ]

Gene ID: 102724617, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02031provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2031provided by HGNC
Primary source
HGNC:HGNC:52865
See related
AllianceGenome:HGNC:52865
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02031 in Genome Data Viewer
Location:
3q26.33
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (182644100..182674596)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (185448803..185479475)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:182217852-182218669 Neighboring gene long intergenic non-protein coding RNA 1995 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:182240944-182242143 Neighboring gene RPL7L1 pseudogene 8 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14930 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20880 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14931 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20881 Neighboring gene uncharacterized LOC107986054 Neighboring gene CRISPRi-validated cis-regulatory element chr3.5107 Neighboring gene CRISPRi-validated cis-regulatory element chr3.5108 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20882 Neighboring gene MPRA-validated peak4955 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14932 Neighboring gene ATP11B divergent transcript

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    182644100..182674596
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_427440.3 RNA Sequence

  2. XR_001741038.1 RNA Sequence

  3. XR_001741037.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    185448803..185479475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074018.1 RNA Sequence

  2. XR_007074020.1 RNA Sequence

  3. XR_007074019.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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