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TWSG1-DT TWSG1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 102724397, updated on 10-Oct-2023

Summary

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Official Symbol
TWSG1-DTprovided by HGNC
Official Full Name
TWSG1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55329
See related
AllianceGenome:HGNC:55329
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
18p11.22
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (9313053..9334469, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (9476266..9497683, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase core subunit V2 Neighboring gene NDUFV2 antisense RNA 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:9135881-9136054 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9278 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13071 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9279 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9281 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9280 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13072 Neighboring gene ankyrin repeat domain 12 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:9264498-9265100 Neighboring gene small nucleolar RNA U13 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:9335059-9335559 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_50729 Neighboring gene twisted gastrulation BMP signaling modulator 1 Neighboring gene uncharacterized LOC105371980 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:9416837-9417784

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183519.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001033

  2. NR_183520.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001033

  3. NR_183521.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001033

  4. NR_183522.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001033

  5. NR_183523.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001033

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    9313053..9334469 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    9476266..9497683 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases