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CLEC4OP C-type lectin domain family 4 member O, pseudogene [ Homo sapiens (human) ]

Gene ID: 102724279, updated on 10-Mar-2024

Summary

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Official Symbol
CLEC4OPprovided by HGNC
Official Full Name
C-type lectin domain family 4 member O, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:52651
See related
Ensembl:ENSG00000291059 AllianceGenome:HGNC:52651
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CLEC4O; LINC01835
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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Location:
19p13.12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (15851993..15864924, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (15980190..15993158, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (15962803..15975734, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 861, pseudogene Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr19:15939001-15940200 Neighboring gene collagen alpha-1(I) chain-like Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr19:15945748-15946947 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10287 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14192 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14193 Neighboring gene urothelial cancer associated 1 Neighboring gene Sharpr-MPRA regulatory region 12980 Neighboring gene cytochrome P450 family 4 subfamily F member 36, pseudogene Neighboring gene cytochrome P450 family 4 subfamily F member 2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr19:16002896-16004095

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. Kim YC, et al. Proc Natl Acad Sci U S A, 2009 May 19. PMID 19416867, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Homology

Other Names

  • C-type lectin domain family 4 member O
  • long intergenic non-protein coding RNA 1835

Clone Names

  • AC004791.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171052.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004791
    Related
    ENST00000589345.7

  2. NR_171053.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004791
    Related
    ENST00000588182.4

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    15851993..15864924 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    15980190..15993158 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001302493.2: Suppressed sequence

    Description
    NM_001302493.2: This RefSeq was removed because it is now thought that this gene does encode a protein.
Nucleotide Protein
Heading Accession and Version

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