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C3orf86P chromosome 3 open reading frame 86, pseudogene [ Homo sapiens (human) ]

Gene ID: 102724231, updated on 10-Mar-2024

Summary

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Official Symbol
C3orf86Pprovided by HGNC
Official Full Name
chromosome 3 open reading frame 86, pseudogeneprovided by HGNC
Gene description
long intergenic non-protein coding RNA 694
Primary source
HGNC:HGNC:44570
See related
Ensembl:ENSG00000293456 AllianceGenome:HGNC:44570
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C3orf86; LINC00694
Expression
Biased expression in testis (RPKM 8.0), spleen (RPKM 1.4) and 4 other tissues See more
Orthologs
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Genomic context

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See C3orf86P in Genome Data Viewer
Location:
3p21.31
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (44421132..44439898, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (44436971..44455737, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (44462624..44481390, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene testis and ovary specific TOPAZ 1 Neighboring gene uncharacterized LOC105377055 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:44379271-44379924 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14262 Neighboring gene MPRA-validated peak4626 silencer Neighboring gene T cell activation inhibitor, mitochondrial Neighboring gene ReSE screen-validated silencer GRCh37_chr3:44420112-44420270 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19763 Neighboring gene long intergenic non-protein coding RNA 1988 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:44482886-44483092 Neighboring gene zinc finger protein 445 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14263 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14264 Neighboring gene uncharacterized LOC101928529 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:44551492-44552268 Neighboring gene zinc finger protein 852

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Homology

Other Names

  • long intergenic non-protein coding RNA 694
  • uncharacterized protein C3orf86

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_172922.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC134943
    Related
    ENST00000634610.1

  2. NR_172923.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC134943
    Related
    ENST00000416124.2

  3. NR_172924.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC134943
    Related
    ENST00000636468.1

  4. NR_172925.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC134943

  5. NR_172926.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC134943
    Related
    ENST00000637612.1

  6. NR_172927.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC134943

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    44421132..44439898 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    44436971..44455737 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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