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LINC02654 long intergenic non-protein coding RNA 2654 [ Homo sapiens (human) ]

Gene ID: 102724039, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02654provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2654provided by HGNC
Primary source
HGNC:HGNC:54140
See related
Ensembl:ENSG00000226140 AllianceGenome:HGNC:54140
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02654 in Genome Data Viewer
Location:
10p13
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (16278057..16295858)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (16296345..16314124)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene ferritin light chain pseudogene 19 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:16228384-16229072 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:16237465-16238026 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:16238027-16238586 Neighboring gene RNA, U6 small nuclear 1075, pseudogene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:16284308-16285306 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:16285307-16286305 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:16390899-16391421 Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2175 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3097 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3098 Neighboring gene MPRA-validated peak880 silencer Neighboring gene phosphotriesterase related Neighboring gene RNA, U2 small nuclear 18, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184073.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355339
    Related
    ENST00000664373.1

  2. NR_184074.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355339
    Related
    ENST00000652949.1

  3. NR_184075.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355339

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    16278057..16295858
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    16296345..16314124
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases