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LOC102723883 uncharacterized LOC102723883 [ Homo sapiens (human) ]

Gene ID: 102723883, updated on 10-Oct-2023

Summary

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Gene symbol
LOC102723883
Gene description
uncharacterized LOC102723883
See related
Ensembl:ENSG00000223504
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.2) See more
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Genomic context

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Location:
6q12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (68055351..68060502)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (69219772..69224924)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (68765243..68770394)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase SUV39H2-like Neighboring gene Sharpr-MPRA regulatory region 13069 Neighboring gene MPRA-validated peak5878 silencer Neighboring gene uncharacterized LOC105377844 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:68706731-68707930 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:68748266-68748958 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:68748959-68749649 Neighboring gene MPRA-validated peak5879 silencer Neighboring gene MPRA-validated peak5880 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24724 Neighboring gene uncharacterized LOC105377846 Neighboring gene long intergenic non-protein coding RNA 2549

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125869.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL646090
    Related
    ENST00000449928.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    68055351..68060502
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    69219772..69224924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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