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LOC102723692 uncharacterized LOC102723692 [ Homo sapiens (human) ]

Gene ID: 102723692, updated on 8-Nov-2023

Summary

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Gene symbol
LOC102723692
Gene description
uncharacterized LOC102723692
See related
Ensembl:ENSG00000261448
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in brain (RPKM 2.1), appendix (RPKM 2.0) and 24 other tissues See more
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Genomic context

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Location:
16p12.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (17134504..17138732)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (17141514..17145768)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (17228361..17232589)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene SPRING1 pseudogene 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10499 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10500 Neighboring gene GATA motif-containing MPRA enhancer 79/80 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:17156208-17157407 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10501 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:17176735-17177633 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:17177634-17178532 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:17200215-17200782 Neighboring gene TCERG1 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10502 Neighboring gene MPRA-validated peak2513 silencer Neighboring gene xylosyltransferase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10503 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10504 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10505 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:17360175-17361046 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:17390476-17390750 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7235 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:17399758-17400258 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:17414499-17414998 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:17424561-17425084 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:17439467-17439968 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10506 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10507 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10508 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7236 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:17498817-17500016 Neighboring gene uncharacterized LOC124903654 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:17516896-17517632 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:17523609-17523772 Neighboring gene uncharacterized LOC107987234 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10509 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10510 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10511 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10512

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135179.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC109446
    Related
    ENST00000567344.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    17134504..17138732
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_019805500.1 Reference GRCh38.p14 PATCHES

    Range
    135765..139993
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    17141514..17145768
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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