U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC01499 long intergenic non-protein coding RNA 1499 [ Homo sapiens (human) ]

Gene ID: 102723644, updated on 10-Oct-2023

Summary

Official Symbol
LINC01499provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1499provided by HGNC
Primary source
HGNC:HGNC:51165
See related
Ensembl:ENSG00000255171 AllianceGenome:HGNC:51165
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.5) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
11p12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (41714568..41836442)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (41861258..41983131)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (41736118..41857992)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ribosomal protein L9 pseudogene 23 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:41623188-41623333 Neighboring gene long intergenic non-protein coding RNA 2741 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:41735352-41736094 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:41775422-41776621 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:41809334-41810021 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:41810022-41810708 Neighboring gene uncharacterized LOC105376639 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:41890849-41891036 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:41969181-41969681 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:41999882-42001081 Neighboring gene long intergenic non-protein coding RNA 2745 Neighboring gene uncharacterized LOC105376641

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120584.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC023442, DB032745
    Related
    ENST00000528720.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    41714568..41836442
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    41861258..41983131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)