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ATXN2-AS ATXN2 antisense RNA [ Homo sapiens (human) ]

Gene ID: 102723619, updated on 10-Oct-2023

Summary

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Official Symbol
ATXN2-ASprovided by HGNC
Official Full Name
ATXN2 antisense RNAprovided by HGNC
Primary source
HGNC:HGNC:51838
See related
Ensembl:ENSG00000258099 AllianceGenome:HGNC:51838
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
12q24.12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (111599498..111600255)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (111576419..111577176)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (112037302..112038059)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene ataxin 2 Neighboring gene U7 small nuclear RNA Neighboring gene ReSE screen-validated silencer GRCh37_chr12:112008371-112008568 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4869 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:112029875-112030049 Neighboring gene IFITM3 pseudogene 5 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4870 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4872 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4871 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4873 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7038 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:112049467-112049966 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:112073223-112073826 Neighboring gene uncharacterized LOC124903020 Neighboring gene BRCA1 associated protein Neighboring gene PEST containing nuclear protein pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. ATXN2-AS, a gene antisense to ATXN2, is associated with spinocerebellar ataxia type 2 and amyotrophic lateral sclerosis. Li PP, et al. Ann Neurol, 2016 Oct. PMID 27531668, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146497.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI927428
    Related
    ENST00000547021.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    111599498..111600255
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    111576419..111577176
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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