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LINC01053 long intergenic non-protein coding RNA 1053 [ Homo sapiens (human) ]

Gene ID: 102723318, updated on 10-Oct-2023

Summary

Official Symbol
LINC01053provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1053provided by HGNC
Primary source
HGNC:HGNC:49047
See related
Ensembl:ENSG00000238169 AllianceGenome:HGNC:49047
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01053 in Genome Data Viewer
Location:
13q12.13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (25181332..25190657)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (24391010..24400319)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (25755470..25764795)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene APC membrane recruitment protein 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5183 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:25747285-25748484 Neighboring gene long intergenic non-protein coding RNA 463 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5184 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7481 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7482 Neighboring gene ribosomal protein L23a pseudogene 69 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_32764 Neighboring gene uncharacterized LOC105370121

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120427.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AB593160, AL359757, BU176203
    Related
    ENST00000457628.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    25181332..25190657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    24391010..24400319
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)