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2810414N06Rik RIKEN cDNA 2810414N06 gene [ Mus musculus (house mouse) ]

Gene ID: 102640772, updated on 8-Feb-2024

Summary

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Official Symbol
2810414N06Rikprovided by MGI
Official Full Name
RIKEN cDNA 2810414N06 geneprovided by MGI
Primary source
MGI:MGI:1919065
See related
Ensembl:ENSMUSG00000100594 AllianceGenome:MGI:1919065
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in genital fat pad adult (RPKM 1.3), subcutaneous fat pad adult (RPKM 1.2) and 27 other tissues See more
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Genomic context

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Location:
1; 1 G2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (151624701..151630769, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (151748950..151755018, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene niban apoptosis regulator 1 Neighboring gene STARR-seq mESC enhancer starr_02626 Neighboring gene STARR-positive B cell enhancer mm9_chr1:153553362-153553663 Neighboring gene STARR-positive B cell enhancer ABC_E8961 Neighboring gene STARR-positive B cell enhancer ABC_E2565 Neighboring gene predicted gene, 41969 Neighboring gene STARR-positive B cell enhancer ABC_E7757 Neighboring gene ER degradation enhancer, mannosidase alpha-like 3 Neighboring gene STARR-positive B cell enhancer ABC_E5818 Neighboring gene STARR-positive B cell enhancer mm9_chr1:153670267-153670567 Neighboring gene predicted gene, 53604 Neighboring gene U4 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_151473.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA271146, AC156542, AK013093, BY076935, CX203092
    Related
    ENSMUST00000186444.3

  2. NR_151474.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC156542, AK013093, CX203092
    Related
    ENSMUST00000243781.1

  3. NR_151475.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC156542
    Related
    ENSMUST00000241183.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    151624701..151630769 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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