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Cdhr17 cadherin related family member 17 [ Mus musculus (house mouse) ]

Gene ID: 102640594, updated on 8-Feb-2024

Summary

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Official Symbol
Cdhr17provided by MGI
Official Full Name
cadherin related family member 17provided by MGI
Primary source
MGI:MGI:5579416
See related
Ensembl:ENSMUSG00000109903 AllianceGenome:MGI:5579416
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm28710
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5 A3; 5
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (16996789..17087437)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (16791791..16882439)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31113 Neighboring gene hepatocyte growth factor Neighboring gene STARR-seq mESC enhancer starr_12489 Neighboring gene VISTA enhancer mm1576 Neighboring gene heterogeneous nuclear ribonucleoprotein A3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_12490 Neighboring gene STARR-seq mESC enhancer starr_12492 Neighboring gene STARR-seq mESC enhancer starr_12493 Neighboring gene STARR-seq mESC enhancer starr_12494 Neighboring gene predicted gene 6673 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4f2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC102640594

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001378608.1 → NP_001365537.1  uncharacterized protein LOC102640594 precursor

    Status: VALIDATED

    Source sequence(s)
    AC158589
    UniProtKB/TrEMBL
    A0A1B0GR31
    Related
    ENSMUSP00000147354.2, ENSMUST00000211738.2
    Conserved Domains (2) summary
    cd11304
    Location:629 → 733
    Cadherin_repeat; Cadherin tandem repeat domain
    cl29226
    Location:754 → 844
    Cadherin; Cadherin domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    16996789..17087437
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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