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Gm13840 predicted gene 13840 [ Mus musculus (house mouse) ]

Gene ID: 102639837, updated on 8-Feb-2024

Summary

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Official Symbol
Gm13840provided by MGI
Official Full Name
predicted gene 13840provided by MGI
Primary source
MGI:MGI:3649479
See related
AllianceGenome:MGI:3649479
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5 F; 5 56.1 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (115644934..115654054)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (115510939..115515995)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene sirtuin 4 Neighboring gene STARR-seq mESC enhancer starr_14130 Neighboring gene predicted gene, 24407 Neighboring gene 40S ribosomal protein S5 pseudogene Neighboring gene paxillin Neighboring gene STARR-seq mESC enhancer starr_14131 Neighboring gene STARR-seq mESC enhancer starr_14132 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:115984948-115985057 Neighboring gene STARR-positive B cell enhancer ABC_E1687 Neighboring gene STARR-positive B cell enhancer ABC_E671 Neighboring gene ribosomal protein lateral stalk subunit P0 Neighboring gene GCN1 activator of EIF2AK4 Neighboring gene microRNA 7029

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    115644934..115654054
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_387611.4 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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