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Spata31d1e spermatogenesis associated 31 subfamily D, member 1E [ Mus musculus (house mouse) ]

Gene ID: 102638268, updated on 8-Feb-2024

Summary

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Official Symbol
Spata31d1eprovided by MGI
Official Full Name
spermatogenesis associated 31 subfamily D, member 1Eprovided by MGI
Primary source
MGI:MGI:1921474
See related
Ensembl:ENSMUSG00000051054 AllianceGenome:MGI:1921474
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700014D04Rik
Expression
Restricted expression toward testis adult (RPKM 13.5) See more
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Genomic context

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Location:
13 B2; 13 31.88 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (59888395..59894685, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (59739173..59746871, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated 31 subfamily D, member 1D Neighboring gene RIKEN cDNA 4930528D03 gene Neighboring gene iron-sulfur cluster assembly 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:59871197-59871469 Neighboring gene ethanol decreased 2 Neighboring gene terminal uridylyl transferase 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
spermatogenesis-associated protein 31D1; uncharacterized protein LOC102638268

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    59888395..59894685 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017315672.3 → XP_017171161.1  spermatogenesis-associated protein 31D1

    UniProtKB/TrEMBL
    J3QMS2
    Related
    ENSMUSP00000136424.2, ENSMUST00000180139.3
    Conserved Domains (1) summary
    pfam14650
    Location:67 → 439
    FAM75; FAM75 family
Nucleotide Protein Strain
Heading Accession and Version

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