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Gm20616 predicted gene 20616 [ Mus musculus (house mouse) ]

Gene ID: 102638259, updated on 8-Feb-2024

Summary

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Official Symbol
Gm20616provided by MGI
Official Full Name
predicted gene 20616provided by MGI
Primary source
MGI:MGI:5313063
See related
Ensembl:ENSMUSG00000093628 AllianceGenome:MGI:5313063
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 4.2) and cerebellum adult (RPKM 0.2) See more
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Genomic context

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Location:
19 C1; 19 21.18 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (26598149..26600805, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (26620749..26623405, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34808 Neighboring gene predicted gene, 54047 Neighboring gene predicted gene, 52395 Neighboring gene STARR-seq mESC enhancer starr_45833 Neighboring gene STARR-positive B cell enhancer ABC_E1975 Neighboring gene STARR-seq mESC enhancer starr_45834 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 Neighboring gene STARR-seq mESC enhancer starr_45835 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:26720706-26720914 Neighboring gene RIKEN cDNA 4931403E22 gene Neighboring gene vaccinia related kinase 1 pseudogene Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:26919922-26920128 Neighboring gene predicted gene, 46648

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    26598149..26600805 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001782659.1 RNA Sequence

    Related
    ENSMUST00000177262.2
Nucleotide Protein Strain
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