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1700041I07Rik RIKEN cDNA 1700041I07 gene [ Mus musculus (house mouse) ]

Gene ID: 102638199, updated on 8-Feb-2024

Summary

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Official Symbol
1700041I07Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700041I07 geneprovided by MGI
Primary source
MGI:MGI:1920523
See related
AllianceGenome:MGI:1920523
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm43741
Expression
Restricted expression toward testis adult (RPKM 5.0) See more
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Genomic context

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Location:
5; 5 G3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (146732635..146754376)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (146795825..146817566)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930573C15 gene Neighboring gene STARR-positive B cell enhancer ABC_E11308 Neighboring gene STARR-seq mESC enhancer starr_14850 Neighboring gene ubiquitin specific peptidase 12 Neighboring gene STARR-positive B cell enhancer ABC_E6401 Neighboring gene STARR-seq mESC enhancer starr_14852 Neighboring gene STARR-positive B cell enhancer ABC_E6402 Neighboring gene STARR-positive B cell enhancer ABC_E6403 Neighboring gene predicted gene, 25091 Neighboring gene predicted gene, 23202 Neighboring gene ribosomal protein L21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    146732635..146754376
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_377208.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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